January 31, 2005

 

 

 

 

Kathy Hopkins

Project Manager, Water Rights Permitting Team

Texas Commission on Environmental Quality

MC-160

P.O. Box 13087

Austin, Texas 78711-3087

 

Re: Water Right Application, San Jacinto River Authority and the City of Houston (WR No. 5807)

 

Dear Ms. Hopkins,

 

Pursuant to Texas Parks and Wildlife Code § 12.001, the Texas Parks and Wildlife Department (TPWD) is the state agency charged with the primary responsibility for protecting the state’s fish and wildlife resources and providing recommendations to local, state, and federal agencies that approve, permit, license, or construct developmental projects.  Environmental reviews of water right applications are conducted in accordance with § 11.147 of the Texas Water Code.  This section requires the Texas Commission on Environmental Quality (TCEQ), in making a final decision on any application to store, take or divert water, to consider all information, evidence and testimony presented by the TPWD.

 

Staff of the TPWD has reviewed the water rights application (WR No. 5807) submitted jointly by the San Jacinto River Authority (SJRA) and the City of Houston (COH).  SJRA and the COH seek authorization to divert and use not to exceed 32,500 acre-feet of water out of the firm storage in Lake Houston on the San Jacinto River in Harris County for municipal and industrial purposes.  Water would be diverted from three diversion points at a maximum combined diversion rate of 465.69 cfs and used in the COH and SJRA service area.

 

The TCEQ Water Availability Model (WAM) for the San Jacinto River Basin indicates that the permitted yield of Lake Houston is 168,000 acre-feet.  After further analysis of the updated WAM (2002) for the San Jacinto River by the SJRA, the actual yield was determined to be approximately 200,500 acre-feet


per year.  This analysis was made using original area-capacities under Scenario 3, which assumes full diversion amounts and no return flows. 

 

The COH currently holds 168,000 acre-feet of appropriated water rights from Lake Houston and owns the lake outright.  Therefore, this application requests the appropriation of the 32,500 acre-feet per year of firm yield remaining in Lake Houston.  No return flows are anticipated to the San Jacinto River or its tributaries from the portion of the additional appropriation granted to the SJRA.  The application indicates that diversions for the COH facilities may be returned to the San Jacinto River or it tributaries through any of the City’s wastewater treatment plants.

 

TPWD Review

 

TPWD reviewed the application with regard to potential impacts from the proposed increase in firm yield to rare and unique species and biotic communities, water quality, instream uses, and freshwater inflows.  TPWD also considered potential cumulative effects on natural resources of the San Jacinto River system that may result from an increase in the firm yield of Lake Houston.  Staff concerns include, but are not limited to, impacts to rare species, the quantity of water available for firm yield, the potential degradation of aquatic and riparian habitats downstream of Lake Houston, the reduction of instream flows below Lake Houston and the subsequent impact on water quality, and the alteration of the frequency and volume of freshwater inflows to the Galveston Bay System.      

 

Rare Species

 

The Texas Biological and Conservation Data System (BCD) was searched for occurrences of rare species or natural communities in the general vicinity of the proposed project.  The BCD information is based on the best data currently available to the state regarding threatened, endangered, or otherwise sensitive species.  According to the BCD, there are several occurrences of the American bald eagle (Haliaeetus leucocephalus), a federal and state listed threatened species, and rare plant communities along the West Fork San Jacinto River and Lake Houston.  The project as proposed with diversions at the Lake Houston Dam will not effect the presence of the American bald eagle or the rare plant communities. 

 

Water Availability

 

The analysis of the updated WAM (2002) performed by the San Jacinto River Authority utilized the original area-capacities of Lake Houston.  Considering the amount of sand mining activity that occurs in the San Jacinto River Basin and the fact that Lake Houston was constructed more than 50 years ago, the storage capacity of the reservoir has undoubtedly decreased due to sedimentation.  Thus, using the original area-capacities for Lake

Houston to evaluate water availability may result in an overestimate as the volume of the reservoir has actually decreased.  

  

Lake Houston was completed in April 1954 with a reported total storage capacity of 158,550 acre-feet and a conservation storage capacity of 147,920 acre-feet (Burns, pers. comm., 2005).  In 1966, Ambursen Engineering Corporation surveyed Lake Houston and found a total storage capacity of 146,769 acre-feet, which represents a 7.4% decrease in total storage capacity since April 1954.  In February 1994, the TWDB surveyed Lake Houston and calculated a total storage capacity of 133,990 acre-feet and a conservation storage capacity of 128,863 acre-feet.  This represents an 8.7% decrease in storage capacity from 1965 to February 1994.  Considering the last survey was performed more than 10 years ago, the total decrease in storage capacity of Lake Houston from 1954 to present is at 8.7% and perhaps as much as 20%.  Overestimation of storage capacity will lead to shortages during dry times that will adversely impact instream flows and freshwater inflows.  As such, the original area-capacities for Lake Houston are no longer valid and should not be used in calculating current water availability.                 

 

TPWD staff recommends the SJRA reanalyze the updated WAM simulations using the updated area-capacities from the 1994 TWDB survey.  The updated storage capacity numbers more accurately reflect the current conditions within Lake Houston and will therefore provide the applicant with a better estimate of dependable firm yield from Lake Houston.

 

Instream Uses

 

The San Jacinto River downstream of the Lake Houston Dam is tidal in nature and is designated as Segment No. 1001 in the State of Texas Water Quality Inventory (1996).  Segment No. 1001 is 17 miles in length starting from a point 100 meters downstream of IH 10 in Harris County upstream to the Lake Houston Dam.  Designated water uses for this segment are contact recreation and high aquatic life.  This segment of the San Jacinto River receives a large amount of recreational use and provides freshwater that supports wetland habitats (i.e. cypress swamps, emergent wetlands, forested wetlands, mudflats, and open water) and a relatively diverse fish community.  Instream flows also aid in the assimilation of urban stormwater runoff and point source discharges associated with the Houston Ship Channel downstream.  Primary concerns associated with reduced instream flows in the San Jacinto River downstream of Lake Houston include an increase in the degree and frequency of saltwater encroachment, loss or alteration of aquatic and riparian habitats due to saltwater intrusion, and degradation of water quality that could potentially result in the nonsupport of TCEQ designated water uses. 

 

Overflows from the Lake Houston Dam occur through a spillway when water levels are greater than 44.44 ft msl.  TPWD staff is concerned about the effect diversions will have on the frequency with which water flows over the spillway.  Because historical data on discharges over the Lake Houston spillway is not readily available, it is difficult to assess the degree to which spills will be altered as a result of the increase in firm yield.  The 32,500 acre-feet of water requested by the applicant equals a 19% increase in firm yield from Lake Houston.  Such an increase in firm yield with corresponding reduction in downstream flows could have significant impacts on the environmental uses of the San Jacinto River downstream of Lake Houston.

 

The San Jacinto River downstream of Lake Houston is fringed by a relatively significant amount of freshwater wetlands, including extensive cypress swamps upstream of Highway 90 and a 456-acre tract of mitigation property located in an area known as Banana Bend.  In addition, the river supports a relatively diverse fish community composed of both freshwater and estuarine species.  Based on an assessment of the fish community, Luedke (1994) characterized this section of the San Jacinto River as the least impacted tributary of the Houston Ship Channel based on (1) the low percentage of tolerant species, (2) the low percentage of striped mullet, gizzard shad, Rio Grande cichlid, and spotted gar and (3) the high number of game fish species.  Due to the types of wetland vegetation (i.e. bald cypress, Taxodium distichum) and freshwater fish species (i.e. white bass, crappie, pirate perch) present downstream of Lake Houston, it is apparent that surface saltwater inundation has not occurred in the area for an extended period of time.  

 

Analysis of water quality data from August 1982 (Kirkpatrick, 1986), when no discharge was occurring over the spillway of the Lake Houston Dam indicates the presence of a saltwater wedge extending just upstream of the Banana Bend area.  In contrast, water quality data from February 1985 (Kirkpatrick, 1987), a time when water was discharging over the spillway of the dam, does not indicate the presence of a saltwater wedge anywhere within the 17-mile stretch of Segment 1001.  Luedke (1994) reported similar findings while assessing the fish populations of the major tributaries to the Houston Ship Channel.  Fish collections at Banana Bend in July 1991, a time of low flow conditions, yielded 6 predominantly estuarine species.  Sampling at the same site in January 1992, a period of high flow conditions, resulted in 14 species of fish, including both freshwater and estuarine species. 

 

A significant long-term decrease in the volume of freshwater that crests the spillway of the Lake Houston Dam would likely allow the saltwater wedge to encroach further upstream and increase surface salinities in the Banana Bend area and possibly upstream of Highway 90.  Riparian and aquatic communities associated with the San Jacinto River downstream of Lake Houston cannot withstand increased salinities for an extended period of time.  Because freshwater wetlands along the Gulf Coast support significant habitat for breeding and wintering waterbirds and support numerous species of amphibians, reptiles, fish, and mammals, the loss or alteration of these wetlands could cause a significant adverse impact on regional wildlife populations.  Additionally, because freshwater wetlands can improve water quality by filtering out sediments, nutrients, and pollutants, their loss or alteration could effectively reduce the water quality of the San Jacinto River downstream of Lake Houston. 

 

Water Quality

 

Additional diversions from Lake Houston that would decrease instream flows downstream of the dam could also significantly degrade water quality within the San Jacinto River and the Galveston Bay system.  The San Jacinto River joins the Houston Ship Channel (TCEQ Segment 1005) approximately 17 miles downstream of the Lake Houston Dam.  Segment 1005 of the Houston Ship Channel is classified as water quality limited and is affected by urban stormwater runoff and major point source discharges.  By decreasing the volume of freshwater that enters the system through the San Jacinto River, it is possible that tidal influences will push return flows from the Houston Ship Channel upstream into the San Jacinto River during low flow periods.  This would degrade water quality within the San Jacinto River downstream of Lake Houston and possibly result in the failure of this segment to meet its TCEQ designated uses.  Furthermore, freshwater inflows to the Galveston Bay system from the San Jacinto River Basin would be dominated by return flows and urban stormwater runoff.  This could have major ecological impacts on the Galveston Bay system and the commercial and recreational fishing industries it supports.

 

In order to protect the instream uses and biotic communities associated with the San Jacinto River downstream of Lake Houston that depend on the quantity and quality of freshwater resources available, a restriction should be imposed that will maintain a predominantly freshwater habitat.  TPWD staff recommends that any diversions associated with an increase in firm yield be limited to those times when streamflow downstream of Lake Houston is sufficient to maintain a specific conductance of 2,000 µmhos as measured within three feet of the water’s surface at Banana Bend Park on the San Jacinto River.      

 

Freshwater Inflows

 

The TPWD has done extensive research into the freshwater inflow needs of the Trinity – San Jacinto estuary, including Galveston Bay (Lee, et al., 2001).  The research is the result of TWC §16.058 that mandates that the TPWD and the Texas Water Development Board (TWDB) determine the bay conditions necessary to support a sound ecological environment.  This includes the effects of and needs for freshwater inflows to Texas bays and estuaries.  In addition, TWC §11.147(b) directs the TCEQ to include in water right permits, to the extent practicable when considering all public interests and the studies mandated by TWC §16.058 as evaluated under TWC §11.1491, those conditions considered necessary to maintain beneficial inflows to any affected bay and estuary system.  Freshwater inflows from river, streams, and local runoff maintain the salinity gradients, nutrient loadings, and sediment inputs needed to support a healthy and productive estuary.   

 

Working cooperatively, the TPWD and TWDB estimate that the Trinity-San Jacinto estuary requires 5.22 million a-ft/yr of freshwater inflows to maximize harvest of oysters, white and brown shrimp, blue crabs, red and black drum, spotted sea trout, and flounder.  Annual freshwater inflows of approximately 4.16 million a-ft are recommended to allow acceptable levels of harvest.  In an effort to determine if the modeling estimates were reasonable, TPWD analyzed historical fish community data.  TPWD’s verification and analysis indicate that a freshwater inflow of between 4.16 and 5.22 million a-ft/yr with an appropriate seasonal distribution would allow the ecological health and productivity of the bay to be protected in the future (Lee et al., 2001).  

 

The San Jacinto River Basin contributed 28% of the average annual freshwater inflow to the Galveston Bay system during the period 1941-1990 (TWDB, 2004).  Approximately 50% of this freshwater inflow is from water that spills over the Lake Houston Dam, which is largely composed of return flows during drier months.  Based on these percentages, the median monthly contribution to the Galveston Bay system from Lake Houston for the period 1941-1990 in acre-feet is as follows:

 

Jan

Feb

Mar

Apr

May

June

July

Aug

Sept

Oct

Nov

Dec

97,929

132,507

91,392

88,550

178,318

117,558

47,653

31,537

46,234

35,265

49,210

87,752

 

TPWD staff recommends an inflow within the range of Min Q to MaxH values as the freshwater inflow needed to fulfill the biological needs of the Galveston Estuary on a seasonal basis (Lee, et al., 2001).  MinQ is defined as the minimal inflow level needed to maintain both the historical salinity gradients and biological productivity, while MaxH constitutes a flow to the estuary that would maximize biological productivity within the modeling constraints.  By using the same percentages as above, the range of values from MinQ to MaxH for contributions from Lake Houston to the Galveston Estuary can be calculated.  These values in acre-feet for the period 1941-1990 are as follows:

 

 

Jan

Feb

Mar

Apr

May

June

July

Aug

Sept

Oct

Nov

Dec

MinQ

21,070

30,338

50,946

49,364

95,158

62,734

32,578

21,560

46,228

35,266

49,210

87,752

MaxH

21,070

21,728

91,392

88,550

178,318

117,558

29,610

19,600

14,420

11,004

49,210

87,752

 

Analysis of these numbers indicates that median monthly inflows and TPWD’s recommended inflow values (MinQ and MaxH) are lowest during the months July through October.  Similarly, analysis of gage height data from the Lake Houston Dam from 1977-1999 indicates that July through October are also the most frequent months when lake levels are below the spillway.  While drought situations during drier summer months are inevitable, TPWD staff is concerned that the cumulative impact from this application and others submitted by the SJRA and the City of Houston will exacerbate periods of no flow over the Lake Houston spillway and decrease freshwater inflows to the Trinity-San Jacinto estuary. 

 

Because historical data on discharges over the Lake Houston spillway was not provided by the applicant it is difficult to assess the adequacy of the quantity and quality of flows remaining after the proposed diversions to meet instream uses and bay and estuary freshwater inflow needs.  The burden of assessing the alteration of flows after diversions is placed upon the applicant according to TAC §295.112(b) and TWC § 11.042(b) (see attachments).  This includes an assessment of the adequacy of flows remaining after the proposed increase in firm yield to meet instream uses and bay and estuary freshwater inflow needs.  Without this information, it is difficult for TPWD staff to fully assess impacts associated with an increase in firm yield from Lake Houston.  Upon receiving the required information, both TCEQ and TPWD staff will be able to properly evaluate the request with regard to protecting instream uses of the San Jacinto River and freshwater inflows to Galveston Bay.

 

In the absence of such information, TPWD staff recommends a streamflow restriction be imposed on diversions associated with this application to protect freshwater inflows.  The contributing flow that has historically spilled over Lake Houston is estimated to be 14% of the total freshwater inflows into the Trinity-San Jacinto estuary.  Based on TPWD’s studies of the estuary, the contributing flows in acre-feet from the Lake Houston drainage are:

 

 

Jan

Feb

Mar

Apr

May

June

July

Aug

Sept

Oct

Nov

Dec

MinQ

21,070

30,338

50,946

49,364

95,158

62,734

32,578

21,560

46,228

35,266

49,210

87,752

MaxH

21,070

21,728

91,392

88,550

178,318

117,558

29,610

19,600

14,420

11,004

49,210

87,752

 

Any flow restriction should be conditioned on a freshwater inflow value within the range of Min Q to MaxH to fulfill the biological needs of the Galveston Estuary on a seasonal basis.  Maintenance of freshwater inflows within the recommended range should also suffice to maintain current instream uses of the San Jacinto River downstream of Lake Houston and negate the need for a restriction based on maintaining freshwater habitat below Lake Houston. 

 

Recommendation

 

To properly ensure that both environmental and human needs are satisfied would require the San Jacinto River system to be operated in a manner that does not adversely impact the frequency with which water crests the spillway at Lake Houston.  Addressing environmental concerns on a permit-by-permit basis cannot effectively achieve this goal.  The cumulative impact from this and other pending applications could prove detrimental to aquatic and riparian habitats in the San Jacinto River downstream of Lake Houston and to the Galveston Bay system.  The formulation of a management plan for the San Jacinto River Basin that addresses environmental needs while developing new sources of water would be the most efficient method for providing water for both environmental and human needs.

 

In the absence of such a management plan, TPWD staff recommends the following restrictions:

 

1)      The applicant should reassess the WAM simulations using the updated area-capacities for Lake Houston from the 1994 survey performed by the TWDB.

 

2)      A flow restriction be imposed conditioned on a freshwater inflow value within the range of Min Q to MaxH to fulfill the biological needs of the Galveston Estuary on a seasonal basis.

 

3)   If the aforementioned streamflow restriction is not imposed, then diversions associated with the increase in firm yield should be limited to those times when streamflow downstream of Lake Houston is sufficient to maintain a specific conductance of 2,000 µmhos, as measured within three feet of the water’s surface at Banana Bend Park on the San Jacinto River, in order to protect the biotic resources that depend on the quantity and quality of freshwater resources available.       

  

If you have any questions regarding these comments, please contact Chad Norris at (512) 912-7161.

 

Sincerely,

 

 

 

 

Chad W. Norris

 

Water Resources Branch

         

 

 

 

 

 

 

 

Burns, Randall.  2005.  Personal communication.  Texas Water Development Board, Surface Water Section, Austin, Texas.

 

Kirkpatrick, Jeff.  1986.  Intensive Survey of the Houston Ship Channel System: Hydrology, Field Measurements, Water Chemistry.  IS 86-10.  Texas Water Commission, Austin, Texas. 131 pages.

 

Kirkpatrick, Jeff.  1987.  Intensive Survey of the Houston Ship Channel System: Hydrology, Field Measurements, Water Chemistry, Sediment Chemistry.  IS 87-09.  Texas Water Commission, Austin, Texas. 90 pages.

 

Lee, W., D. Buzan, P. Eldridge, and W. Pulich Jr.  2001.  Freshwater Inflow Recommendation for the Trinity-San Jacinto Estuary of Texas.  Texas Parks and Wildlife Department.  Coastal Studies Program.  Austin, Tx.  24 pages.

 

Luedke, Mark.  1994.  Fish Populations in the Major Tributaries of the Houston Ship Channel: Segments 1001, 1006, 1007, 1013, 1017.  AS-26/SR.  Texas Natural Resource Conservation Commission.  32 pages.

 

Texas Water Development Board.  2004.  Trinity-San Jacinto Estuary Freshwater Inflows (Galveston Bay).  On the Internet at:   http://hyper20.twdb.state.tx.us/data/bays_estuaries/TxEmp/galvtable.htm

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Attachment A

 

RULE §295.112

 

(a) The purpose of this section is to provide the application content requirements for a bed and banks authorization under Texas Water Code §11.042(b).

 

(b) A person who has discharged or intends to discharge groundwater-based effluent into a stream or watercourse and wishes to divert and use the discharged water shall submit an application with the commission containing the following information:

 

  (1) the name, mailing address, and telephone number of the applicant;

  (2) the name of the stream and the locations of the point of the existing or proposed discharge and diversion as identified on a USGS 7.5 minute topographical map(s);

  (3) the source, amount, and rates of the existing or proposed discharge and diversion;

  (4) a description of the water quality of the water discharged or proposed to be discharged and the permit number and name of any related discharge permit;

  (5) the date of initial discharge of the groundwater into the watercourse or stream, if applicable, and any related records of discharge periods, points, amounts and rates;

  (6) the estimated amount of water that will be lost to transportation, evaporation, seepage, channel or other associated carriage losses from the point of discharge to the point of diversion;

  (7) an assessment of the adequacy of the quantity and quality of flows remaining after the proposed diversion to meet instream uses and bay and estuary freshwater inflow needs; and

  (8) any other information the executive director may need to complete an analysis of the application.

 

(c) Nothing in this section shall be construed to affect an existing project for which all required water rights and reuse authorizations have been granted by the commission prior to September 1, 1997.

 

(d) The method and calculation of carriage losses under this section shall be subject to the review and approval of the executive director.

 

 

 

 

 

 

Attachment B

 

TWC § 11.042. Delivering Water Down Banks and Beds

 

(a) Under rules prescribed by the commission, a person, association of persons, corporation, water control and improvement district, water improvement district, or irrigation district supplying stored or conserved water under contract as provided in this chapter may use the bank and bed of any flowing natural stream in the state to convey the water from the place of storage to the place of use or to the diversion point of the appropriator.

 

(b) A person who wishes to discharge and then subsequently divert and reuse the person's existing return flows derived from privately owned groundwater must obtain prior authorization from the commission for the diversion and the reuse of these return flows. The authorization may allow for the diversion and reuse by the discharger of existing return flows, less carriage losses, and shall be subject to special conditions if necessary to protect an existing water right that was granted based on the use or availability of these return flows. Special conditions may also be provided to help maintain instream uses and freshwater inflows to bays and estuaries. A person wishing to divert and reuse future increases of return flows derived from privately owned groundwater must obtain authorization to reuse increases in return flows before the increase.

 

(c) Except as otherwise provided in Subsection (a) of this section, a person who wishes to convey and subsequently divert water in a watercourse or stream must obtain the prior approval of the commission through a bed and banks authorization. The authorization shall allow to be diverted only the amount of water put into a watercourse or stream, less carriage losses and subject to any special conditions that may address the impact of the discharge, conveyance, and diversion on existing permits, certified filings, or certificates of adjudication, instream uses, and freshwater inflows to bays and estuaries. Water discharged into a watercourse or stream under this chapter shall not cause a degradation of water quality to the extent that the stream segment's classification would be lowered. Authorizations under this section and water quality authorizations may be approved in a consolidated permit proceeding.

 

(d) Nothing in this section shall be construed to affect an existing project for which water rights and reuse authorizations have been granted by the commission before September 1, 1997.